PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01150g05007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 687aa MW: 76104.6 Da PI: 6.5723 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.5 | 2e-29 | 70 | 154 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+ql Niben101Scf01150g05007.1 70 RWPRQETIALLKIRSEMDLVFRDSSLKGPLWEEVSRKMADLGFHRSAKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFEQL 152 8********************************************************************96..66678******* PP trihelix 86 ea 87 ea Niben101Scf01150g05007.1 153 EA 154 85 PP | |||||||
2 | trihelix | 103.2 | 1.9e-32 | 489 | 574 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k ev aLi +r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql Niben101Scf01150g05007.1 489 RWPKAEVEALIMLRTQLDVKYQENGPKGPLWEEISAGMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQL 572 8*********************************************************************8.99*********** PP trihelix 86 ea 87 +a Niben101Scf01150g05007.1 573 DA 574 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0052 | 67 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.22E-26 | 69 | 134 | No hit | No description |
Pfam | PF13837 | 2.0E-19 | 69 | 155 | No hit | No description |
PROSITE profile | PS50090 | 6.888 | 69 | 127 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.259 | 482 | 546 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-4 | 486 | 548 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.2E-23 | 488 | 575 | No hit | No description |
CDD | cd12203 | 4.27E-29 | 488 | 553 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 488 | 545 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MLGVSGIISS TNSGGGGENP ESGGGAASGG SSEIAIGGGG VSISGGFMTE EDRAIRNMEE 60 GERNSGGGNR WPRQETIALL KIRSEMDLVF RDSSLKGPLW EEVSRKMADL GFHRSAKKCK 120 EKFENVYKYH KRTKDGRASK ADGKTYRFFE QLEALENNPS SHHSLLLPPP ITSSRPPPPP 180 LEATPINMAM PMPSGNANTI NLQLPASQQA TTTVTVSSAP PNNSSNIFVS SHQNTISHQN 240 IPLSSSMAPS SQPSPQPANN PINNLQANTN FPSHDQNISA MSYSTSSSTS SDEDIQRRHK 300 KKRKWKDFFE RLMKDVIDKQ EDLQRRFLET LEKRERDRMV REEAWRVQEV ARMNREHDLL 360 VQERSTAAAK DAAVISFLQK ITEQQNIQIP SNINVAPPSA QVQIQLPENP PPPSETRSQV 420 VHQQTQPTAV LVSPAPTQPS PATPAPISLP ATIPAQSLPL TPPVPAKSVE LTPKSDNGGE 480 GYSPASSSRW PKAEVEALIM LRTQLDVKYQ ENGPKGPLWE EISAGMKKLG YNRNAKRCKE 540 KWENINKYFK KVKESNKKRP EDSKTCPYFH QLDALYKEKA KNETSSSFSN PSASGFALNP 600 ENNPMMPIMA RPEQQWPRPP HHQQPQQHHE STRMDHDHES DNMDQDEDDE EEEDEDEENA 660 YEIVANKQQS SMAAANSTTT TTATTTV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 295 | 302 | QRRHKKKR |
2 | 295 | 303 | QRRHKKKRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618661.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like | ||||
TrEMBL | A0A1S3XDN4 | 0.0 | A0A1S3XDN4_TOBAC; trihelix transcription factor GTL1-like | ||||
STRING | XP_009618661.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 3e-82 | Trihelix family protein |