PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00735g06023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 474aa    MW: 52963.2 Da    PI: 8.3656
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00735g06023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012412434223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +Cp C+  Fs+   L +H ++ H
  Niben101Scf00735g06023.1 412 QCPQCSLKFSSVAALISHVQKvH 434
                               7******************9988 PP
2zf-C2H215.35.8e-05446468223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +Cp C+k F+++ +L+ H  + H
  Niben101Scf00735g06023.1 446 VCPRCSKGFRDPVSLVEHVEReH 468
                               7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142232.0E-2547179No hitNo description
Gene3DG3DSA:4.10.1110.109.4E-4199248IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.7E-10286342IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.28E-9288342No hitNo description
PfamPF014281.0E-7296336IPR000058Zinc finger, AN1-type
SMARTSM003550.015411434IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280413434IPR007087Zinc finger, C2H2
SMARTSM003557.2445468IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182445473IPR007087Zinc finger, C2H2
PROSITE patternPS000280447468IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGTPALPNLG KHCFVDDCRQ IDFLPFTCDC CHQYPTDISA PDKEKIEGDA LNAIQLSLAP  60
NVLCEVSTGS EETTKQLWER LEGLYQDRSV TTRMLLQRRL YTFKMGSGTS LQGHLDAFNK  120
LVMDLQIAGI KREEETIACA LLFSLNSGYR DIENSMMYSK EPIKIEQVRQ ALNSSDVRRH  180
IEEDRDDQAS GLFVRGRTSQ QGKSKSKHRS KSCVNKKNTE CWGCGLPNVF CLDHRSYNRH  240
HCPKANKNDV TVVVCPLCAK GVRLIPDEDP NITWESHVNT ECDPSNYEKA TKKRKCPVPG  300
CREILTFSNT IKCRECTVDH CLKHRFGPDH KCPGRKKPEA AFPFLNFRTG SRKDEPKKAP  360
AASSSSWATN LFKAAEAGMS KLSSEFSQTL QMGKEGISGT NRSGSVSGQV EQCPQCSLKF  420
SSVAALISHV QKVHEKNGIM NLTVDVCPRC SKGFRDPVSL VEHVEREHRG TSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765392.11e-177PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
RefseqXP_016478515.11e-177PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ424e-99SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1S4APP01e-176A0A1S4APP0_TOBAC; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
TrEMBLA0A1U7VBI41e-176A0A1U7VBI4_NICSY; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
STRINGXP_009765392.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-99C2H2 family protein