PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00715g09001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 348aa MW: 38350.7 Da PI: 8.204 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.6 | 1.6e-20 | 164 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+ t+ v + v+rs ed+++v+ tYegeHnh+ Niben101Scf00715g09001.1 164 VKDGYQWRKYGQKVTRDNPSPRAYFSSTT---IVVRYVQRSIEDQSIVVATYEGEHNHP 219 58***********************8876...68899*********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-18 | 156 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.554 | 159 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-17 | 160 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-19 | 164 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-15 | 165 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEFTSLVDTS LDLSFRPLPV LDKVAKLEVQ SNFTGLSRDN MLAGDLLEEL NRVSSENKKL 60 TEMLTVVCEN YNALRNQLME YMNNQQNNGV VDDSAGSRKR KSENLSNPNN NNKNNNSDIV 120 CGRSSESSSS DEESCCKKPR EEHIKTKVSV VSTKTEASYT SLIVKDGYQW RKYGQKVTRD 180 NPSPRAYFSS TTIVVRYVQR SIEDQSIVVA TYEGEHNHPI HPSKPEAAAG TSTTSTGSRL 240 NVRTIGGTTA SVPCSTTLNP SGPTITLDLT EPKTVAKGDI MKMSSSISPK GGNSHRTTEG 300 DHYSRPEFQQ FLIEQMASSL TKDPIFKAAL AAAISGKNLQ HNNQTSRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-14 | 163 | 218 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-14 | 163 | 218 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 101 | SRKRKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312579.1 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | Q9SSX8 | 0.0 | Q9SSX8_TOBAC; WIZZ | ||||
STRING | XP_009764801.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-74 | WRKY DNA-binding protein 40 |