PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00715g09001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 348aa    MW: 38350.7 Da    PI: 8.204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00715g09001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.61.6e-20164219159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dgy+WrKYGqK+ ++++ pr+Y+  t+    v + v+rs ed+++v+ tYegeHnh+
  Niben101Scf00715g09001.1 164 VKDGYQWRKYGQKVTRDNPSPRAYFSSTT---IVVRYVQRSIEDQSIVVATYEGEHNHP 219
                               58***********************8876...68899*********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-18156219IPR003657WRKY domain
PROSITE profilePS5081119.554159221IPR003657WRKY domain
SuperFamilySSF1182907.59E-17160220IPR003657WRKY domain
SMARTSM007742.6E-19164220IPR003657WRKY domain
PfamPF031067.1E-15165219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPLPV LDKVAKLEVQ SNFTGLSRDN MLAGDLLEEL NRVSSENKKL  60
TEMLTVVCEN YNALRNQLME YMNNQQNNGV VDDSAGSRKR KSENLSNPNN NNKNNNSDIV  120
CGRSSESSSS DEESCCKKPR EEHIKTKVSV VSTKTEASYT SLIVKDGYQW RKYGQKVTRD  180
NPSPRAYFSS TTIVVRYVQR SIEDQSIVVA TYEGEHNHPI HPSKPEAAAG TSTTSTGSRL  240
NVRTIGGTTA SVPCSTTLNP SGPTITLDLT EPKTVAKGDI MKMSSSISPK GGNSHRTTEG  300
DHYSRPEFQQ FLIEQMASSL TKDPIFKAAL AAAISGKNLQ HNNQTSRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-141632181674Probable WRKY transcription factor 4
2lex_A1e-141632181674Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101SRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312579.10.0probable WRKY transcription factor 40
TrEMBLQ9SSX80.0Q9SSX8_TOBAC; WIZZ
STRINGXP_009764801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-74WRKY DNA-binding protein 40