PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00683g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 504aa    MW: 54763.5 Da    PI: 7.4089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00683g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35.1e-31247304260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  er   +++++ei+Y+g+H+h+k
  Niben101Scf00683g00003.1 247 DDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERLP-EGQITEIVYKGSHDHPK 304
                               8****************************************.***************85 PP
2WRKY106.51.4e-33410468159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Niben101Scf00683g00003.1 410 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 468
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-26237305IPR003657WRKY domain
PROSITE profilePS5081121.941241305IPR003657WRKY domain
SuperFamilySSF1182903.01E-24243305IPR003657WRKY domain
SMARTSM007749.6E-33246304IPR003657WRKY domain
PfamPF031062.2E-23247303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37395470IPR003657WRKY domain
SuperFamilySSF1182901.7E-29402470IPR003657WRKY domain
PROSITE profilePS5081138.825405470IPR003657WRKY domain
SMARTSM007743.1E-39410469IPR003657WRKY domain
PfamPF031062.9E-26411468IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEDSHTKSHS HSHSQQHSSS EQLRDGISTV TDGGISSGAA GSNGAAKYKL MTPAKLPISR  60
STCITIPPGL SPSSFLESPV LLSNIKAEPS PTTGSFSKLQ AVQGSGGNAA FLLTRGYSSG  120
NTYSESKSSC FEFKFAGGSC STSGLVAEHA ISTGLNQQQN EPLKEVQDQS HPQLVATSSL  180
AKHEMASSKE LSLSAPINVD DSSKEESLSA PISVDAMNMR GQSNTSMQVS FADHKDVSSV  240
TAERSSDDGY NWRKYGQKLV KGSEFPRSYY KCTYPNCEVK KIFERLPEGQ ITEIVYKGSH  300
DHPKPQLSRQ FTPGALMSIQ EDKCEKDKFN TNAQTGKTEP ISTPVSPQQV DADGPEGAVS  360
QMQGTNNDMD EDDPFVKRRK MDGAMDITPV IKPIREPRVV VQTVSEVDIL DDGYRWRKYG  420
QKVVRGNPNP RSYYKCTNAG CPVRKHVERA SHDPKAVITT YEGKHNHDVP AARSNNHEMA  480
GSTPANGGSR IRAEETYSIN XCKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38247471878Probable WRKY transcription factor 4
2lex_A4e-38247471878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804327.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-144WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1U7YJR70.0A0A1U7YJR7_NICSY; probable WRKY transcription factor 20 isoform X1
STRINGXP_009804327.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-138WRKY family protein