PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00445g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 256aa MW: 29460.3 Da PI: 9.733

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00445g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.1	4.3e-50	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i ev+iyk++PwdLp +e+e yfFs+r+ ky++g+r+nrat+sgyWka Niben101Scf00445g02005.1 14 LPPGFRFRPTDEELVVQYLKRKVLSFPLPA-SIILEVEIYKSDPWDLPG---YSEEERYFFSTREVKYPNGNRSNRATNSGYWKA 94 79**************************.89***********3...367899*********************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+++s +++lvglkktLvfy+g++p+g +t+W+mheyrl Niben101Scf00445g02005.1 95 TGIDKQIVSCkSQQLVGLKKTLVFYRGKSPHGCRTNWIMHEYRL 138 ***99746677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-58	9	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	14	165	IPR003441	NAC domain
Pfam	PF02365	1.0E-26	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEKLSFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVLSFP LPASIILEVE IYKSDPWDLP 60 GYSEEERYFF STREVKYPNG NRSNRATNSG YWKATGIDKQ IVSCKSQQLV GLKKTLVFYR 120 GKSPHGCRTN WIMHEYRLPN LQPSSIQPNN NLLQENLVLC RIFLKRRDGK NEEDITHQVF 180 ISRNETANSG NKKKKAVFYD FMAREREELN GVIPASTSFS GSSGITELTA NESDDHEESS 240 SSFTSFTTAF RRKQLP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	12	166	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	12	166	18	169	NAC domain-containing protein 19
3swm_B	1e-52	12	166	18	169	NAC domain-containing protein 19
3swm_C	1e-52	12	166	18	169	NAC domain-containing protein 19
3swm_D	1e-52	12	166	18	169	NAC domain-containing protein 19
3swp_A	1e-52	12	166	18	169	NAC domain-containing protein 19
3swp_B	1e-52	12	166	18	169	NAC domain-containing protein 19
3swp_C	1e-52	12	166	18	169	NAC domain-containing protein 19
3swp_D	1e-52	12	166	18	169	NAC domain-containing protein 19
4dul_A	1e-52	12	166	15	166	NAC domain-containing protein 19
4dul_B	1e-52	12	166	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016436915.1	1e-154	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-88	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S3XAF5	1e-153	A0A1S3XAF5_TOBAC; NAC domain-containing protein 83-like
STRING	XP_009590289.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-88	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]