PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00436g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 398aa    MW: 44774.5 Da    PI: 7.3574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00436g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-07235257123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C+ Cgk F+r  nL+ H+r H
  Niben101Scf00436g07002.1 235 HYCQVCGKGFKRDANLRMHMRAH 257
                               68*******************99 PP
2zf-C2H210.80.0016328351123
                               EEETTTT.EEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                               y+C+ C+ k Fs  s+L++H + +
  Niben101Scf00436g07002.1 328 YVCNRCNkKQFSVLSDLRTHEKHC 351
                               9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.54E-6234259No hitNo description
SMARTSM003550.0034235257IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-7235294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653235262IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
SMARTSM0035574290323IPR015880Zinc finger, C2H2-like
SMARTSM0035521328350IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MIEGTTNIPC FPNTNPQNLP LYAPIHRNLD LDQDHMISSS LHVSSATSSL NHSHQPNSFL  60
YNLSLLKEKV DQVRSLATMF ISSNNQTIVQ TSESTSMDIA NMGSLIQEII TIASSLMFSC  120
QKISLGSTLT TNNINSSRFL EPSQIQLQDD EHIDPLPQGF YSNETLDHWY EENYASCSNI  180
EDNKSHSTII AINDHSNVQL GKRKFKNEGM QNISSQENCD IIELDAADLL AKYTHYCQVC  240
GKGFKRDANL RMHMRAHGDE YKSNAALSNP LKNNGNDGIN DGLSKLSKKY SCPQEGCRWN  300
KKHAKFQPLK SMICVKNHYK RSHCPKMYVC NRCNKKQFSV LSDLRTHEKH CGDLKWQCSC  360
GLSREMGLLE PAPIGLGEGV GDLFEGNGDR KGTLWFKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799889.10.0PREDICTED: zinc finger protein STOP1 homolog
RefseqXP_016478397.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A1S4ANS90.0A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog
TrEMBLA0A1U7YKX10.0A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog
STRINGXP_009799889.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-98C2H2 family protein