PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00339g04009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 26207.5 Da PI: 5.3057 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.2e-38 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l ++e++ dam+s+++e++++ r PvyG+v+ i +l+ Niben101Scf00339g04009.1 10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLdDDEQKADAMKSIIFESDMWERFPVYGCVEYICHLR 94 7************************************************555669****************************** PP DUF260 85 qqleqlkaelallkee 100 qql+ + +el+++ ++ Niben101Scf00339g04009.1 95 QQLQLALEELHYVYAQ 110 *********9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.225 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD 60 DEQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LAFYRQQQQQ 120 QQQLALQHGV TSEIPFVNGI SMGPFFTSEG ECSEGGQKPN LLGSDSIFDH NNSRAFPASD 180 HAIFGFGIRD DQRDISHEYE CLINPFNNIM ADDRQSYVET KEACDSRYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-24 | 2 | 114 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019254019.1 | 1e-154 | PREDICTED: LOB domain-containing protein 11-like | ||||
Swissprot | Q9STS6 | 8e-40 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1J6I1I5 | 1e-152 | A0A1J6I1I5_NICAT; Lob domain-containing protein 27 | ||||
STRING | XP_009768780.1 | 1e-148 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-37 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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