PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00128g05008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 198aa MW: 22593.4 Da PI: 6.8986

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00128g05008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	10	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l ++++ dam+s+++e+++r + PvyG+v+ il l+ Niben101Scf00128g05008.1 10 ACAACKYQRRKCSQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPVYGCVECILYLR 94 7**********************************************445569************************** PP DUF260 85 qqleqlkaelallke 99 qql+ + +e +++ + Niben101Scf00128g05008.1 95 QQLQLALQEREYVYT 109 **99999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.101	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-35	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTKGETSRPA CAACKYQRRK CSQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG 60 DDQKADAMKS IIFESDMREK FPVYGCVECI LYLRQQLQLA LQEREYVYTQ LAIYRQQHLG 120 LSSSENNSVG NKGIMTAPFF SSDSESSQGI IYPDFDKHNS LAYPTSSHVF RLGSQEQQEV 180 SRDFESLTLF NSTLVDDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	11	120	12	120	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	11	120	12	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795991.1	1e-130	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	4e-35	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1U7Y216	1e-128	A0A1U7Y216_NICSY; LOB domain-containing protein 27-like
STRING	XP_009795991.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-35	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]