PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00108g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 315aa    MW: 34777 Da    PI: 10.2104
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00108g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-19161194134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Niben101Scf00108g01009.1 161 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 194
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.2E-20155206IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-12158195No hitNo description
Gene3DG3DSA:3.30.50.101.0E-15159194IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.532159191IPR000679Zinc finger, GATA-type
CDDcd002025.71E-12160188No hitNo description
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
PfamPF003206.4E-17161194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MIPTFRSSSS SSPSFTFELN NSEVHDLSHI NPLVSPSYQV ASSSSYSSCQ TFFNNSTINQ  60
DQTGYYHSQF YQLQHQPEVD NFASRSGSHD HLEKKNKGLK LTLWKKGDKL MQKMKNSDHT  120
HIKLKLEDQK KQQSSPNLET DYSSNSSSNN SNNNNIPIRV CSDCNTTKTP LWRSGPKGPK  180
SLCNACGIRQ RKARRAMAAA AAAAASANGT NFTTETSTTT ATAMKIKVQQ KQKITTKVNN  240
NHVVPFKKRC KFITSTTAAA VGSSSSIINN AQKKICFEDF FVNLSNNLAL HRVFPQDEKE  300
AAILLMALSS GLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234671.11e-178PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1J6KCZ91e-176A0A1J6KCZ9_NICAT; Putative gata transcription factor 22
STRINGSolyc12g008830.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-16cytokinin-responsive gata factor 1