PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Ctg15860g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34865.5 Da PI: 8.4453 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.5 | 4.6e-48 | 25 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 pGfrFhPtdeelv +yL+ kve++++++ e ik++diyk++ wdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkat Niben101Ctg15860g00004.1 25 LPGFRFHPTDEELVGFYLQGKVEKRPITI-ELIKQIDIYKYDRWDLPKSSNMGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKAT 108 69***************************.89***************988999******************************** PP NAM 87 gkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d++++s+ ++e +glkk+Lv+y+g++ kg+ktdW+mhe+rl Niben101Ctg15860g00004.1 109 GIDRPIYSTfgegrRHECIGLKKSLVYYRGSTGKGTKTDWMMHEFRL 155 ********9988777777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-52 | 22 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.339 | 24 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 26 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEVENLSSMV TVSNYTEEEE EDVILPGFRF HPTDEELVGF YLQGKVEKRP ITIELIKQID 60 IYKYDRWDLP KSSNMGDKEW YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DRPIYSTFGE 120 GRRHECIGLK KSLVYYRGST GKGTKTDWMM HEFRLPAEND KSTKHIEAKS IAQEAEVWTL 180 CRIFKRNGSY RKCLPYWRFV AAAKRHPIDT SSKTCSADSS DYIISFGAPV MRPHNNITET 240 KPFSGHVHDI SNNSQLLMGQ LSSVRQAPAA SHTLAPDMNE LLKHGDWEEL RSFLDLAVDP 300 FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 26 | 192 | 22 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778771.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_016515497.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-86 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1S4DPZ3 | 0.0 | A0A1S4DPZ3_TOBAC; transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A1U7WNA2 | 0.0 | A0A1U7WNA2_NICSY; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_009778771.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-88 | NAC domain containing protein 42 |