PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg14444g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 175aa    MW: 19887.4 Da    PI: 9.8544
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg14444g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.82e-3296154159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYGqK+vk++++prsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Niben101Ctg14444g00003.1  96 LDDGYRWRKYGQKTVKNNNYPRSYYKCTHEGCNVKKQVQRLSKDEGVVVTTYEGMHTHP 154
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3481154IPR003657WRKY domain
SuperFamilySSF1182901.44E-2988155IPR003657WRKY domain
PROSITE profilePS5081129.95391156IPR003657WRKY domain
SMARTSM007745.4E-3896155IPR003657WRKY domain
PfamPF031061.2E-2697154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MENQSMLFLG STSCARIISS DSFSNSINIG YNSMNGWTSG LKTEISNSTA REQNSPVGVA  60
SETHTTNIVS SLKKKGDKKI KKPRFAFQTR SQVDILDDGY RWRKYGQKTV KNNNYPRSYY  120
KCTHEGCNVK KQVQRLSKDE GVVVTTYEGM HTHPIDKPTD NFEQILHQMH IIPPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2886155776Probable WRKY transcription factor 4
2lex_A1e-2886155776Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788059.11e-110PREDICTED: probable WRKY transcription factor 43
RefseqXP_016437762.11e-110PREDICTED: probable WRKY transcription factor 43
SwissprotQ9S7638e-51WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLA0A1S3XCY21e-108A0A1S3XCY2_TOBAC; probable WRKY transcription factor 43
TrEMBLA0A1U7XM871e-108A0A1U7XM87_NICSY; probable WRKY transcription factor 43
STRINGXP_009788059.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.19e-53WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]