PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Ctg14368g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 289aa MW: 31128.2 Da PI: 9.5756

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Ctg14368g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.8e-15	211	261	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ ee+ ++ Niben101Ctg14368g00003.1 211 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEEMLEM 261 79***************************************9887776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-13	207	272	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	209	258	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.13E-28	211	263	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.0E-15	211	260	No hit	No description
Pfam	PF00170	2.1E-13	211	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-11	211	260	No hit	No description
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGGSGINGQE VGSVQGGNLQ RQCSMTLPRT LSHKTVDEVW RDMSKEYGGG KDGNSVGVPT 60 NLPQRQQTLG EITLEEFLVR AGVVREDAQL AAKSNNVGGI FADLSYAGNN TGVGFGYQEL 120 GSPGMRGGMV GISDPALNSN FVQGAALTSG GMGMVGLGAG AVTVATASPA VSSDGLGKSS 180 GDTPFVSPLP YVFNGSIRGR KYSTVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE 240 VAKLKEENEE LQKKQEEMLE MQKNEVMEMM NLQRGAKRRC LRRTETGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022144237.1	1e-110	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
Swissprot	Q9M7Q4	2e-73	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	V5L0A1	1e-131	V5L0A1_SOLNI; AREB-like protein
STRING	cassava4.1_007256m	1e-102	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	5e-49	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]