PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Ctg05879g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 163aa    MW: 19173.9 Da    PI: 9.6907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Ctg05879g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.46.8e-20171462127
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G  F+Ptd e++ +yL   v++++l++++  ++++d+y   ePw++ ++++   ++k  yf ++++k++++ k  +r++ +g+
  Niben101Ctg05879g00002.1  17 PMGNLFRPTDREVL-KYLLGFVRDERLPCQNElMQQTDLYADkEPWQIFEAYDDhgTNKTRYFITPQKKEKSRRKSVTRTIGKGI 100
                               78999*******99.9**********8887766999**997559****7433332144466******999999************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127
                               Wk   k  ++++ kg+l+g  k+L +   +++ + +  +W+m ey+
  Niben101Ctg05879g00002.1 101 WKPLSKGLALFDDKGRLMGFVKSLKYIpANKSTNNVYGEWFMTEYS 146
                               ***************************6568888899********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-2111149IPR003441NAC domain
PROSITE profilePS5100520.40716163IPR003441NAC domain
PfamPF023651.8E-1017146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTTYSDHRAM GCSSRYPMGN LFRPTDREVL KYLLGFVRDE RLPCQNELMQ QTDLYADKEP  60
WQIFEAYDDH GTNKTRYFIT PQKKEKSRRK SVTRTIGKGI WKPLSKGLAL FDDKGRLMGF  120
VKSLKYIPAN KSTNNVYGEW FMTEYSSYDC YLDAREIKNK GFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224265.11e-95PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A314KVH51e-100A0A314KVH5_NICAT; Uncharacterized protein
STRINGXP_009598748.11e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-08NAC-domain protein 101