PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_9828_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 300aa    MW: 34113.4 Da    PI: 8.5817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_9828_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19217251135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Neem_9828_f_1 217 CQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 251
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-16211261IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.873214247IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14214274No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14215249IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-14216264No hitNo description
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
PfamPF003204.6E-17217251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MESLGSVACI PDDLLDFSFD IDEEDDDEHT KPNKRPRNAF SCLNPNGPDS TSLDVFQHDD  60
SSPVFGEAEF LLTRPSFVVT RSLFWRSKRQ RLVGWVRFRE YEELEWLENK DSFPTLETFV  120
EVPNPSFFKQ QSPISVLENS NSSTSSSTNG STITNNTNHG NSIIMNCCDN IRVPVRARSK  180
RRTRRRELQN HDSWWGIQEN VKTVKPVVSK MIIGRKCQHC GAEKTPQWRA GPLGPKTLCN  240
ACGVRYKSGR LVPEYRPASS PTFSSELHSN SHRKVLEMRR QKQLMGLELG LVGVKPVEKG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492137.11e-102GATA transcription factor 1-like isoform X1
TrEMBLV4RIC81e-100V4RIC8_9ROSI; Uncharacterized protein
STRINGXP_006492137.11e-101(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-51GATA transcription factor 1