PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_877_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 142aa MW: 15982.7 Da PI: 5.8055 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 80 | 132 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ Neem_877_f_2 80 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEALATQLKLRPRQVEVWFQNRRAR 132 788899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 80.3 | 3e-26 | 80 | 133 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRAR Neem_877_f_2 80 RKKLRLSKEQSRLLEESFRQNHTLNPKQKEALATQLKLRPRQVEVWFQNRRARS 133 69***************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 64 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-19 | 65 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.374 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-14 | 78 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.27E-16 | 79 | 133 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 80 | 132 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MAVLPRSSSS LELTISVPGF SSSPSLPASS GDQQNQLAAF TMKDLDINQI PTGEGGEEEY 60 WNATGSMEDE EESSNGGPPR KKLRLSKEQS RLLEESFRQN HTLNPKQKEA LATQLKLRPR 120 QVEVWFQNRR ARSFHYFVGG WD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657445.1 | 7e-62 | PREDICTED: homeobox-leucine zipper protein HOX3 isoform X1 | ||||
Refseq | XP_019076308.1 | 1e-62 | PREDICTED: homeobox-leucine zipper protein HOX3 isoform X2 | ||||
Swissprot | Q8S9N6 | 6e-45 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A1Q3BH86 | 9e-62 | A0A1Q3BH86_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein | ||||
STRING | VIT_01s0011g04870.t01 | 3e-61 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 1e-43 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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