PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7328_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 361aa    MW: 40473.7 Da    PI: 4.8101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7328_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.69.2e-31351643128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    +G rF+Ptde l  +yL+ kv+g++  l +  ik+vd+yk+ePw L   +++ ++  +yfF+  + ky+tg++ nr++ +g+W++tg++  v+ ++
  Neem_7328_f_1  35 VGTRFRPTDEILARHYLAGKVSGSTDGLiFPLIKQVDVYKCEPWLLSrDAHNFGDGIMYFFTALKMKYHTGTNVNRVAGDGFWRKTGNSSYVKGED 130
                    79***********************6651345**************933445577788************************************** PP

            NAM  97 gelvglkktLvfy.kg.rapkgektdWvmheyrl 128
                    g  + +k+ L++y +g +  +++kt+W+m+e+ l
  Neem_7328_f_1 131 GLPIATKTPLAYYmNGqKPGESKKTQWLMKEFIL 164
                    *************5342555778*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3330182IPR003441NAC domain
PROSITE profilePS5100533.24433183IPR003441NAC domain
PfamPF023654.3E-1535163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAEVSSQST ADEENGSAVN TVTGIESAIN LTHVVGTRFR PTDEILARHY LAGKVSGSTD  60
GLIFPLIKQV DVYKCEPWLL SRDAHNFGDG IMYFFTALKM KYHTGTNVNR VAGDGFWRKT  120
GNSSYVKGED GLPIATKTPL AYYMNGQKPG ESKKTQWLMK EFILERQVAE KSNTLALCAI  180
YLHDKKRKQY DRGDQNVELN DQGALATEPN ERVPCNYPSD VTDIGNCYQP QRQLSEPSTE  240
NLDFHQKQDS YNPEFNSSSN PSAAHDILPG VTIQAGNSNQ NFSNRERESQ GATDTKMNYL  300
HDQSSLSDFL PLEDFDEEEF LNHSLEELRR LVYDNKLPPE VSEDHSRTAG PVTNNDYPLI  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-21241815163NO APICAL MERISTEM PROTEIN
1ut4_B3e-21241815163NO APICAL MERISTEM PROTEIN
1ut7_A3e-21241815163NO APICAL MERISTEM PROTEIN
1ut7_B3e-21241815163NO APICAL MERISTEM PROTEIN
3swm_A3e-21241818166NAC domain-containing protein 19
3swm_B3e-21241818166NAC domain-containing protein 19
3swm_C3e-21241818166NAC domain-containing protein 19
3swm_D3e-21241818166NAC domain-containing protein 19
3swp_A3e-21241818166NAC domain-containing protein 19
3swp_B3e-21241818166NAC domain-containing protein 19
3swp_C3e-21241818166NAC domain-containing protein 19
3swp_D3e-21241818166NAC domain-containing protein 19
4dul_A3e-21241815163NAC domain-containing protein 19
4dul_B3e-21241815163NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2128435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.15e-24NAC domain containing protein 19