PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_606_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 471aa MW: 52267 Da PI: 7.2588

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_606_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	251.5	3.2e-77	139	413	1	277
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 lv++L++cAeav+ +d++ a+alL++++ +a g+++qR+a++f+++L+ rla + + + + p+++s +se++ al+l +e++P ++f+h+ Neem_606_f_4 139 LVQQLIACAEAVACRDKAHASALLSEVRANALVFGTSFQRVASCFVQGLSDRLALvQPLGAVGVVGPTTKSIAVTSEKAEALSLVYEIFPQIQFGHF 235 689*************************************************9333344444455555555699999************** PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 +aN Ilea+ege+ vH++D++++ +G QW +L+++La+R+ ++pp+lRiTg+g+ +e+l+++g+ L+ +A++l+++fef + v+k+le+ Neem_606_f_4 236 IANASILEAFEGESLVHVVDLGMTlglpHGRQWRNLMHSLANRSaKPPPRLRITGFGN----CTERLQSIGDELKCYADSLKLNFEFLM-VEKNLET 327 ****************99873333678*********78888*****....9*********************9.8** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 l+ ++++v+ gE+l+++++l+lh +++es + +vL+ +++lsP+v++++e++++hn++ Fl rf+eal+yysa+fdsl+a lp+ Neem_606_f_4 328 LQAKDINVQDGEVLVISSILHLHCVVKESRGALN---SVLQRLNKLSPRVFILAEHDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPK 413 **********************88877777...8*********************************************9986 PP
2	GRAS	44.5	2.6e-14	413	469	317	374
GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+++aGF+pvp++ qak lrk++ +gy++ ee+g+lvlgWk++p+++vS+W+ Neem_606_f_4 413 KRMSRAGFQPVPIKM--IIQAKQWLRKFQiCEGYTIIEEKGCLVLGWKSKPIIAVSCWK 469 69*********75..679************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.378	113	471	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-74	139	413	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAPDYQWPPR FYLDDKNNEV IGLDLNFSAA GFISFFDAST SKSSSYAWSV SDETQDQKRL 60 KKTPVTDESS GSNSSLCSGG NNRITGSLSR LPRLQFRDHI WAYTQRYLAI EAMEEAALAM 120 MRGEETEVKD EGNGDGMKLV QQLIACAEAV ACRDKAHASA LLSEVRANAL VFGTSFQRVA 180 SCFVQGLSDR LALVQPLGAV GVVGPTTKSI AVTSEKAEAL SLVYEIFPQI QFGHFIANAS 240 ILEAFEGESL VHVVDLGMTL GLPHGRQWRN LMHSLANRSA KPPPRLRITG FGNCTERLQS 300 IGDELKCYAD SLKLNFEFLM VEKNLETLQA KDINVQDGEV LVISSILHLH CVVKESRGAL 360 NSVLQRLNKL SPRVFILAEH DSSHNGPFFL GRFMEALHYY SAIFDSLDAM LPKRMSRAGF 420 QPVPIKMIIQ AKQWLRKFQI CEGYTIIEEK GCLVLGWKSK PIIAVSCWKC S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAPDYQWPPR FYLDDKNNEV IGLDLNFSAA GFISFFDAST SKSSSYAWSV SDETQDQKRL  60
KKTPVTDESS GSNSSLCSGG NNRITGSLSR LPRLQFRDHI WAYTQRYLAI EAMEEAALAM  120
MRGEETEVKD EGNGDGMKLV QQLIACAEAV ACRDKAHASA LLSEVRANAL VFGTSFQRVA  180
SCFVQGLSDR LALVQPLGAV GVVGPTTKSI AVTSEKAEAL SLVYEIFPQI QFGHFIANAS  240
ILEAFEGESL VHVVDLGMTL GLPHGRQWRN LMHSLANRSA KPPPRLRITG FGNCTERLQS  300
IGDELKCYAD SLKLNFEFLM VEKNLETLQA KDINVQDGEV LVISSILHLH CVVKESRGAL  360
NSVLQRLNKL SPRVFILAEH DSSHNGPFFL GRFMEALHYY SAIFDSLDAM LPKRMSRAGF  420
QPVPIKMIIQ AKQWLRKFQI CEGYTIIEEK GCLVLGWKSK PIIAVSCWKC S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-49	123	468	1	377	Protein SCARECROW
5b3h_D	1e-49	123	468	1	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024042075.1	0.0	DELLA protein GAI1
TrEMBL	A0A067H3B1	0.0	A0A067H3B1_CITSI; Uncharacterized protein
STRING	XP_006484335.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-53	GRAS family protein