PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5988_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 473aa    MW: 53986.2 Da    PI: 8.7869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5988_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.8e-10426464237
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-H CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtl 37 
                      +rW+ eE+e l ++v+++G+g+Wk I +  +   + Rt+
    Neem_5988_f_3 426 KRWSLEEEEALRKGVQEFGKGNWKVILKSNPeafEERTE 464
                      69*************************988877766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-9419468IPR009057Homeodomain-like
PROSITE profilePS500906.249420464IPR017877Myb-like domain
SuperFamilySSF466893.43E-9422468IPR009057Homeodomain-like
PfamPF002495.5E-7426456IPR001005SANT/Myb domain
CDDcd116601.07E-10426468No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDKDISRWVI EFLLRHSKSD QLIKKILVKL PVSNHDIRLK KSILLHSIQT EISNGSLSEL  60
ILESLRAIEV LDKKEGIKIT SSMKEAYCAV ALECTIKYLG EAVDKQNEYL EAVKRIWRDE  120
IENLGESELV TSELLKWKNH IEMAIGDEEM CSKLLKMSTP NSALRLVKNF LGEEWAIMGP  180
SFLDLAVAKM RLLKEKESGS GNVVEERAVG KQKAILLLNY VVTTKHEHCP LGIQKENVVL  240
KRKHIVPHKR MRGRVKITDN EELGMDASCS KYDTMSTPEV NKVQEALKSS SLELRAIVTD  300
PLPDALLRAA LVLSEMGREN QNHVSSVEKQ NNVDEDVPKP SVNRSVEPVQ AKEGDNRNQS  360
CSHHNDVPKP SLMERNHTAH TYEWNDSPGE LSNHGNRFHL PSPKRKAVSP LNKYEIKNLP  420
KRRKMKRWSL EEEEALRKGV QEFGKGNWKV ILKSNPEAFE ERTEVYLKLM QCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403423KRKAVSPLNKYEIKNLPKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9FZU71e-140A0A2N9FZU7_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-36MYB_related family protein