PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_413_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 514aa MW: 57140.4 Da PI: 5.6878 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 355 | 377 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+k+F + L H +H Neem_413_f_5 355 YSCPLCNKTFDKHQALGGHVASH 377 99*********999999998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.621 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 79 | 99 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-7 | 80 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.38E-7 | 130 | 152 | No hit | No description |
Pfam | PF13912 | 9.3E-4 | 130 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.8 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.871 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.3E-5 | 353 | 383 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 355 | 382 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-5 | 355 | 378 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 355 | 377 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 357 | 377 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.38E-7 | 433 | 460 | No hit | No description |
PROSITE profile | PS50157 | 9.64 | 438 | 460 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.1E-13 | 438 | 461 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 438 | 460 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 440 | 460 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MAQAQEQTHF PSLAADKVAA AAFQAASEDL IKEENQPVFE ADDLVDSDTH ASLSLKLKIP 60 RPDVIVEDLQ RHPLSDVLRT CDECGKQFIS GKALGGHKRA CLQKKNIQKQ KVKNVVSVKL 120 DGDQTSAGLH MCYVCHQNFR SLKSLYGHMR KHPDREWRGI QPPPQHENLC ISSTVSDYDD 180 QDHGEDVYHR DDEDRGVDYC SDNSAVDLVD TLKGWSVKAK RGQRLSEVEA MQQAVHDLML 240 LAQFRTKDRT VTSKKRGFDQ VSSVGSGYGL LKLKENRPET EDIGKRIEVE DGLHYEETKN 300 MTCNSEDTWI LKDYEDESEM EIIDEMKQQK KKRRLNELDD LDSVKEEPIT TIQTYSCPLC 360 NKTFDKHQAL GGHVASHNKN KSLMNTAKES SAASASASTA DDRNSNLNID SKATEKDKQP 420 EETGDSSRVA AAAAGTDHQC NICNKSFPTG QALGGHKRCH WTGPAEAFSS SSQVTTSAGE 480 VTQTAPRVVL DFDLNDRPPE YYQFHGVEAT AAAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 329 | 333 | KKKRR |
2 | 329 | 334 | KKKRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006452771.1 | 1e-126 | transcriptional regulator ATRX homolog | ||||
TrEMBL | V4UTT6 | 1e-125 | V4UTT6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006452771.1 | 1e-126 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 2e-21 | C2H2 family protein |