PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_38718_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 414aa MW: 47089.4 Da PI: 5.6015

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_38718_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	107.1	2.4e-33	242	405	1	162
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...fsevsPil 91 lv+lLl++Ae + +++e+a++lL+r + +a+++++p+qR+++yf+ AL++r++r +++ ++k l+++ + ++ + l + + ++ P+ Neem_38718_f_1 242 LVHLLLAAAEKLGYQQFERASRLLSRCEWIAAERANPVQRIVFYFAAALRERINReTGTMTSKELESTGMNLADHRNGLGSNPIfltCYQRLPFS 336 68***************************************************6677778888888777777666666665533368999* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetg 162 ++ +lt qaI e v +++++H iDf+i G+QW +++qaLa+R+ ++ l iT+v+ +ke++eetg Neem_38718_f_1 337 QVMYLTGIQAIIENVGNANKIHLIDFEIRSGVQWTSFMQALAERRqRPIQLLNITAVAF---RDKEKVEETG 405 ****************************************9983555699****9...4677777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.691	216	414	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-31	242	405	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MANTLFSFTS FDFNGIQGRY STLLGDYHKE EVVLLEEKQA QMFSIEELGE VNPDLCPEFG 60 AYQEQEENIA KKGPHLLEEQ RQLLQHQNKL PNHDLLLNEL HPNFALSTTQ CLLLNELHPN 120 FALSTTQSFQ EMPKLKSVPA STQEVLKPVK EIPQPFALSS LELLSNYASG SRKLKTNLPT 180 HMSNESNAGS SKKLSTEEIM RVAGARYVHF SDHSYDDFSM VMHPFGYALW GLSEEETRDV 240 ELVHLLLAAA EKLGYQQFER ASRLLSRCEW IAAERANPVQ RIVFYFAAAL RERINRETGT 300 MTSKELESTG MNLADHRNGL GSNPIFLTCY QRLPFSQVMY LTGIQAIIEN VGNANKIHLI 360 DFEIRSGVQW TSFMQALAER RQRPIQLLNI TAVAFRDKEK VEETGCLYNM FTGD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MANTLFSFTS FDFNGIQGRY STLLGDYHKE EVVLLEEKQA QMFSIEELGE VNPDLCPEFG  60
AYQEQEENIA KKGPHLLEEQ RQLLQHQNKL PNHDLLLNEL HPNFALSTTQ CLLLNELHPN  120
FALSTTQSFQ EMPKLKSVPA STQEVLKPVK EIPQPFALSS LELLSNYASG SRKLKTNLPT  180
HMSNESNAGS SKKLSTEEIM RVAGARYVHF SDHSYDDFSM VMHPFGYALW GLSEEETRDV  240
ELVHLLLAAA EKLGYQQFER ASRLLSRCEW IAAERANPVQ RIVFYFAAAL RERINRETGT  300
MTSKELESTG MNLADHRNGL GSNPIFLTCY QRLPFSQVMY LTGIQAIIEN VGNANKIHLI  360
DFEIRSGVQW TSFMQALAER RQRPIQLLNI TAVAFRDKEK VEETGCLYNM FTGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-15	272	393	33	147	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492448.1	1e-173	DELLA protein RGL2-like
TrEMBL	A0A2H5NXK0	1e-174	A0A2H5NXK0_CITUN; Uncharacterized protein
STRING	XP_006492448.1	1e-173	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-15	GRAS family protein