PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3598_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 147aa    MW: 16470.1 Da    PI: 5.3061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3598_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000293203855
                   STCHHHHHHHHHHHHHHH CS
            HLH 38 lsKaeiLekAveYIksLq 55
                   ++Ka++Le A +Y+k+Lq
  Neem_3598_f_2  3 MDKASVLEDAFNYLKQLQ 20
                   68***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-5236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-6338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQMDKASVLE DAFNYLKQLQ EQVRMLEEQA AKHRTELMIV VKKSRLSADD ETSSSYGNLG  60
SPNLPEIEAR VSDRDVLIRI QCEKKKGCVV NILTEIEKLQ LTVLNSKVLP FGSSTLDITV  120
VAQMDAELAT TAKDLARNLR SALLQFM
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890448.18e-58transcription factor bHLH25-like
SwissprotQ1PF163e-40BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A2I4EDT95e-56A0A2I4EDT9_JUGRE; transcription factor bHLH18-like isoform X2
STRINGEOX918221e-55(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]