PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_34837_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bZIP | ||||||||
Protein Properties | Length: 214aa MW: 24621.8 Da PI: 8.4391 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.1 | 3e-11 | 53 | 91 | 5 | 40 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 k err+++NReAAr+sR+RKka++++Le k ++Le+ Neem_34837_f_1 53 KTERRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 91 89**************************83333444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.5E-4 | 48 | 116 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.7E-8 | 49 | 95 | No hit | No description |
PROSITE profile | PS50217 | 9.427 | 51 | 95 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.45E-7 | 52 | 96 | No hit | No description |
Pfam | PF00170 | 3.8E-8 | 53 | 91 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.63E-22 | 53 | 104 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 56 | 71 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.1E-29 | 139 | 212 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSSTSTELAA LRRMSIFEPY PPISMWGDAF QGDASPNTDS STIVQVDARL DNKTERRLAQ 60 NREAARKSRL RKKAYVQQLE SSRLKLAQLE QELERTRHQG LYIGIASDGS HYGLSAHINP 120 GITAFEMEYG HWVEEQNRQI CELRNALQAH ITDIELRILV ESGLNHYYNL FRMKADAAKA 180 DVFYLISGMW RTSTERFFQW IGGFRPSELL NVKH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434079.1 | 1e-127 | transcription factor TGA7 isoform X2 | ||||
Swissprot | Q93ZE2 | 3e-95 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | V4V5P2 | 1e-125 | V4V5P2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434079.1 | 1e-126 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77920.1 | 1e-97 | bZIP family protein |
Publications ? help Back to Top | |||
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