PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32876_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 110aa    MW: 12511.5 Da    PI: 11.6786
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32876_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-081160255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r   n++E++RR+++++ +++  + + ++   p   +s aeiL +A  Y  +Lq
  Neem_32876_f_1 11 RIHRNMMEKNRRKHMKDLIAKFASTISPQ---P-SMMSMAEILDQARSYRMQLQ 60
                    7788**********************996...2.56***********9977776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-9665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.95959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-81168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-51160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MVQSSSSSAS RIHRNMMEKN RRKHMKDLIA KFASTISPQP SMMSMAEILD QARSYRMQLQ  60
KNHAESLKRR KALLGGGDDQ KRKNSMAESS SSSSSMLPIL KTTVRIQLWK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950208.16e-19transcription factor bHLH167-like
TrEMBLA0A2H5PEV71e-16A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEV91e-15A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEY11e-15A0A2H5PEY1_CITUN; Uncharacterized protein
TrEMBLV4UBF61e-16V4UBF6_9ROSI; Uncharacterized protein
STRINGXP_006446341.12e-17(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-06bHLH family protein