PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32272_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 276aa    MW: 30969.7 Da    PI: 7.9002
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32272_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-1381131155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Neem_32272_f_1  81 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 131
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.007146IPR001471AP2/ERF domain
SMARTSM003803.7E-5252IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-61246IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-91246IPR001471AP2/ERF domain
PfamPF008475.5E-981131IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1781140IPR016177DNA-binding domain
CDDcd000184.72E-2681141No hitNo description
Gene3DG3DSA:3.30.730.104.4E-1682139IPR001471AP2/ERF domain
PROSITE profilePS5103215.52782139IPR001471AP2/ERF domain
SMARTSM003802.5E-3282145IPR001471AP2/ERF domain
PRINTSPR003672.0E-68394IPR001471AP2/ERF domain
PRINTSPR003672.0E-6121141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGISYLVDLS FQRVLLCGFD TAHAAARAYD RAAIKFRGVD ADINFSLADY EEDMKQMKNL  60
TKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEVEAAR  120
AYDKAAIKCN GREAVTNFEP STYEGEINSE GSNEAGEHNL DLNLGISPTS GSGPKENEGH  180
PQFLSGPYGV YAGRNSMMEN FNAAAAGDSP SKGLMRTSEH PRFWNGVYPS FLRTEIHFKS  240
PEKGCLKQRG TLIENYFRFG KRDECLAYTV TEWPGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4379185e-97AM437918.1 Vitis vinifera contig VV78X091249.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488203.11e-125ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC32e-80AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2H5NED61e-124A0A2H5NED6_CITUN; Uncharacterized protein
STRINGXP_006488203.11e-125(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-86related to AP2.7