PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29099_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 209aa    MW: 22697.5 Da    PI: 5.8609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29099_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.6e-06175200630
                     HHHHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                     +++Er RR ri +++ +L+el+P+ +
  Neem_29099_f_1 175 SIAERVRRTRISDRIRKLQELVPNmD 200
                     689********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.537169209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6172208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-6174208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQPTAAGSSS SSGGGGGGGG ELNRAGLARF RSAPATWLEA LLEEEEEDPL KPNQCLTQLL  60
SSGDPGLSQL DQVGFPRQNS SPADSLDGYF PNYGIPPSYD YLAPNIDVSP SNKRAREDNM  120
QFPSPKFHTE SKGEQSGQLP SAVSNLGDVD MEKLLEDSVP CRVRAKRGCA THPRSIAERV  180
RRTRISDRIR KLQELVPNMD KLIKICMLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473253.12e-90transcription factor bHLH80 isoform X2
RefseqXP_024952054.15e-90transcription factor bHLH81 isoform X1
RefseqXP_024952055.11e-90transcription factor bHLH81 isoform X3
SwissprotQ9C8P83e-62BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A067GWL34e-89A0A067GWL3_CITSI; Uncharacterized protein
TrEMBLA0A067GZ941e-88A0A067GZ94_CITSI; Uncharacterized protein
TrEMBLA0A067H8E86e-89A0A067H8E8_CITSI; Uncharacterized protein
TrEMBLA0A067H8S89e-89A0A067H8S8_CITSI; Uncharacterized protein
STRINGXP_006473253.19e-90(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09180.11e-53bHLH family protein