PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27763_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28300.7 Da PI: 5.2329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.3e-05 | 145 | 185 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR +iN+++ L++++P + k + a +L + ++Y++sLq Neem_27763_f_1 145 VRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 185 6******************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.515 | 134 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-11 | 139 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-12 | 145 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.14E-6 | 146 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MADFTEDFRP SFPFLYIDPN MEQHQFSVLD NASLNYQSFL PFSNDNFFSH QQPEFPGDLA 60 ENFPGVFQQS NINYQNMLPV SQSTVTIESE NKKRKAVEIS ETSCENSSSP VCEIETKRKN 120 NSGGRRKRVK GNEKEEEKPK EVVHVRRGKI NERLRCLQDI VPGCYKTMGM AVMLDEIINY 180 VQSLQNQVEF LSMKLTAASR FYDFNSESDA IETMQRAKAY EAKDTERLMR EGYGGIGSCS 240 SSLTRPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006485801.1 | 1e-102 | transcription factor BEE 3 | ||||
Swissprot | Q8GWK7 | 7e-51 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A067EQR4 | 1e-101 | A0A067EQR4_CITSI; Uncharacterized protein | ||||
STRING | XP_006485801.1 | 1e-102 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2997 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 3e-47 | BR enhanced expression 1 |
Publications ? help Back to Top | |||
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