PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1931_f_24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | DBB | ||||||||
Protein Properties | Length: 319aa MW: 35302.2 Da PI: 5.7293 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.8 | 1.9e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC+ ++ lC++C H+ H+ Neem_1931_f_24 4 QCDVCNKDEASVFCTADEAALCDTCDHRVHHAnklaskHQ 43 7******99******************9964446666666 PP | |||||||
2 | zf-B_box | 26.3 | 1.5e-08 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++ek++ lfC++++ lC+dC + +H Ht Neem_1931_f_24 56 PLCDVCQEKRAFLFCQQDRAILCRDCDFPIHTAneHT 92 78****************************9546665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.064 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.15E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 3.4E-5 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.7E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.4E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-6 | 56 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.67E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKIQCDVCNK DEASVFCTAD EAALCDTCDH RVHHANKLAS KHQRFSLVHP STKQFPLCDV 60 CQEKRAFLFC QQDRAILCRD CDFPIHTANE HTQNHNRFLL TGVKLSATST LYPSSANNGC 120 DSVPDAKSQS QQSSIKKPVS VALLNSNPST NSTKISTATA PTTAIVNNSG DSLVASEDGV 180 STSSISEYLE MLPGWHVEDF LDSSSDPFGF CKYSWISTFF HVDLSQSNDG MLPFSDTDFD 240 CNLSSFSSES MGIWVPQAPT PLQPSLQSSQ IGEHISFRET NEVNSMKANN RRYNTDDVFT 300 VPQISPQSVG FKRSRPNFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473589.1 | 1e-152 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 1e-84 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2H5NS46 | 1e-150 | A0A2H5NS46_CITUN; Uncharacterized protein | ||||
STRING | XP_006473589.1 | 1e-151 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-85 | salt tolerance homolog2 |