PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17585_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 168aa    MW: 19066.9 Da    PI: 9.1807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17585_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-111359555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     n++E+ RR ++++ + +L +l+P++      Kls  e + +A+ YI +Lq
  Neem_17585_f_1 13 RNIIEKHRRMNMRDLLTKLSSLIPPQ----RSKLSMTELVDQATSYIIQLQ 59
                    69***********************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.201858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-111176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-121176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-51360No hitNo description
PfamPF000104.2E-81359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-61464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MALRTSSAST AQRNIIEKHR RMNMRDLLTK LSSLIPPQRS KLSMTELVDQ ATSYIIQLQK  60
NKDSLNRRRE LLRGDDHASS SSSRMLPIMN ITTMDSTLEV NLICGLTNRN FMLSEIINVL  120
EDEGAEVIDA TQLNAGDRII YIIKSKAISS RIGVETERIQ ERLQDLVH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046481.15e-67transcription factor bHLH167
TrEMBLA0A2H5PEV98e-65A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBLA0A2H5PEW67e-65A0A2H5PEW6_CITUN; Uncharacterized protein
STRINGXP_006446341.15e-65(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-31bHLH family protein