PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1619_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 176aa MW: 19842 Da PI: 6.5078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1619_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.2e-11	49	90	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f L++++P +K++ a++Le+A++Y+k L Neem_1619_f_1 49 AARNRRHRISDRFKILQSMVPGG-----TKMDTASMLEEAINYVKFL 90 569****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.98	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-14	46	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-13	47	94	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-12	47	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-13	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-8	50	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MENVLSNCSN SNDPNSTGCS NSNLQGKNKK RNGNRNQTVK LSTDPQSVAA RNRRHRISDR 60 FKILQSMVPG GTKMDTASML EEAINYVKFL KTVIWLHENI INSVEHHHEE SLANFLPGSF 120 PYFPEGFYSS INNLAPPEQQ YRVEASQPPL ASQDFNGFVQ GEESETFSCL DSFMQH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015386693.1	6e-59	transcription factor bHLH87
Swissprot	Q9M041	1e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A067F0N6	3e-53	A0A067F0N6_CITSI; Uncharacterized protein
TrEMBL	A0A2H5MX20	3e-53	A0A2H5MX20_CITUN; Uncharacterized protein
TrEMBL	V4S5I8	2e-53	V4S5I8_9ROSI; Uncharacterized protein
STRING	XP_006429448.1	4e-54	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-33	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]