PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1536_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 722aa    MW: 79618.4 Da    PI: 8.0257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1536_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.4e-10273321355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Neem_1536_f_3 273 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 321
                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16268337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-10268325No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16270338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-7273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.40.101.4E-16671718IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578508.11E-20673720No hitNo description
CDDcd001621.43E-11673718No hitNo description
PfamPF136392.1E-13673715IPR001841Zinc finger, RING-type
SMARTSM001846.4E-8674714IPR001841Zinc finger, RING-type
PROSITE profilePS5008913.109674715IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MGGGDNDDMG FQRRNESVMN CPSSGMNTNP LPQKVSGMTM NWVSMFKSPS GADHFFGSGW  60
DPIVSLSHGE NFGVSSMVSH NEFATSSYPV AMENQGISST SNLVQYSSDP SFVELVPKIP  120
CFGRSNLSEM VSSFGPRENS QIANSGCPLN YVPNEGGNGR TSTNVSQSYE DRQISEDAAI  180
GVSTNGKTRK RAPESNSHFN PDKNAEAELQ KDPSGDSSGV LKEQDDKKQK IEQNTGANLR  240
GEQAGKQAKD SSNSGEAPKE YIHVRAKRGQ ATNSHSLAER VRREKISERM RLLQELVPGC  300
NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNI DIERILSKDI LHSRSSSAAL  360
LGYSSGMTSS QPYPPGLFHG TIPSIPSANP QFPPLPQVWY RSSYLTQILC LLKALTQGIS  420
LTKIQSVLDH EFQSLYQMGF DSSSAVDSLG QNEFLPNALA FVACCSKMST TCELKLQQDC  480
TIINKVRNLN WDFRNMRPGF VIQLRVRHAV QDRNTPGLRA TNTKPDRFFY VEQDLFLSYH  540
GMMGCLSNIL ANEGITVDAD GRFLCRNLVR LLLPNVFSQS VPICSLQRVV ELVLDHARYA  600
NLRQCNRFRK LVPLAMDLTL VRNQPFQFQL QLVDEAVILG GESSGAIAIK SKTVVAPVKL  660
VEGLIQASCT EKDCSICLEN FSVGQLASRT PCSHIFHKKC IARWIIKSQS CPLCRADLSK  720
PA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472332.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A067H1I20.0A0A067H1I2_CITSI; Uncharacterized protein
STRINGXP_006472332.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-69bHLH family protein