PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1516_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41998.2 Da PI: 9.5648 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 3e-13 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ie + r +t+ kR+ g+ KKA+E +LC++ ++ii++++ Neem_1516_f_1 11 IEKEKARMITYQKRKRGLKKKAQEFTTLCGVPTCMIIYGPR 51 89999**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-10 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-16 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.311 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.30E-17 | 2 | 50 | No hit | No description |
PRINTS | PR00404 | 4.5E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-15 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGRGKLTMEL IEKEKARMIT YQKRKRGLKK KAQEFTTLCG VPTCMIIYGP RLNNRPVDVE 60 IWPQDHQDFM AIVNSYRDKA FSSIRGVKSQ NMYNFFADRK RKVDEKIAKT RKANYESKFS 120 GGLDDLNQFS MDQLQAILSM FDYNLDVATR KLTILKGNQI LIDDSNSELL VGGCSINAAQ 180 FLFQKTMEAD VFNRQLPISS SVYMQPPYCP SDHHHHHQAL QMVPFDFNPM MVMVNGGDQM 240 GNSPYIPRHL DPMAAMIDNT SLMMNNPRPA LQFFGSTSSQ PYKQFPVLPS ISSQIQDSQF 300 HEFYGDINNS EFRHKSQTSC KYFFRAFHLK SKTLSFMNSM VTSITASFAI RARPVANMNM 360 VSSDYY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488665.1 | 1e-105 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A2H5ND17 | 1e-106 | A0A2H5ND17_CITUN; Uncharacterized protein | ||||
STRING | XP_006488665.1 | 1e-104 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16227 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 3e-24 | AGAMOUS-like 82 |