PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1360_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 922aa MW: 102917 Da PI: 8.1033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1360_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir+H Neem_1360_f_3 77 KCDKCSREFCSTINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.284	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MPVTKLKSSN VTDVVKAEDG NDSLDTFIKQ AIGKEPLLSF SRNGDSSVQW IQLLQALDQQ 60 ELPGWPLLTP LKVQMQKCDK CSREFCSTIN YRRHIRVHHR LKKLDKDSTK NRDLLGAFWD 120 KLSVDEAKEV VSFKNAALED IVQARPSRYP ISSQELFGIL DDASEKTFLC GTAVSMQKYI 180 FDGEAGKIGL ETRNLVACTS FLVEQILIKA WLADKDAEAL RCQKLLVEEE EAAQRRQAEL 240 LERKRQKKLR QKELKAKEQR HEEKADDKES TDDMLESVPP PESSSPLDTS DSDGHNVDAV 300 SDHVPASFEP FLIANSEEDV DYEVQTGSCN ECTDLGYGQN VERRIIQGSG RRHMVVTRRQ 360 APSKSRGLPN GFHASQNSQA TKLGGMQKHG INRDTRAAPT VSGNKVWSRK PKPENDFGIV 420 KTTVLKEGID QPEQSKNHEV LIGSISVMLG NCNQQEGKSL VEAQDDGMVE HQMPKKNNVL 480 EKPKPDSIQS GANRPTVKFW RPVSRHGTKG PVSVRNGIRE SEAEFNAGQA GDQTLSNESC 540 LRSMDDNNCG LENTSLMEDT ICGGSMQFNS HAAKAFLSER WKEAIAAEHV KLVLTLECES 600 SGFQEVQSDC QVAVFQPSDF HKKNFCSNGE SRSVNIDSST MGAGKAPKFR LKPEKVKNYN 660 PTKQEKHYNT KMSGGVGATC NEVSLQREEE VTYKQQDDSS SFKKANKTAT RAPRKAAAFL 720 SLRQLNALAV ITVFAASGMV SAGDFVFVIF SVIYMYFLWK VSFPSLHSKE PYVFDPKNKI 780 LRLYVMVGAI IGLLLPIGYI LEGIVDGDRG AVKSAAPHVF LLASQVFMEG VAFSDGFSTP 840 IRVFVPVFYN ARRIFTLLDW LMSEFSKEES EYGISARRLY LGRALAVANT AFWCFNLFGF 900 LLPFYLPKAF KRYYSATGNK VK

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MPVTKLKSSN VTDVVKAEDG NDSLDTFIKQ AIGKEPLLSF SRNGDSSVQW IQLLQALDQQ  60
ELPGWPLLTP LKVQMQKCDK CSREFCSTIN YRRHIRVHHR LKKLDKDSTK NRDLLGAFWD  120
KLSVDEAKEV VSFKNAALED IVQARPSRYP ISSQELFGIL DDASEKTFLC GTAVSMQKYI  180
FDGEAGKIGL ETRNLVACTS FLVEQILIKA WLADKDAEAL RCQKLLVEEE EAAQRRQAEL  240
LERKRQKKLR QKELKAKEQR HEEKADDKES TDDMLESVPP PESSSPLDTS DSDGHNVDAV  300
SDHVPASFEP FLIANSEEDV DYEVQTGSCN ECTDLGYGQN VERRIIQGSG RRHMVVTRRQ  360
APSKSRGLPN GFHASQNSQA TKLGGMQKHG INRDTRAAPT VSGNKVWSRK PKPENDFGIV  420
KTTVLKEGID QPEQSKNHEV LIGSISVMLG NCNQQEGKSL VEAQDDGMVE HQMPKKNNVL  480
EKPKPDSIQS GANRPTVKFW RPVSRHGTKG PVSVRNGIRE SEAEFNAGQA GDQTLSNESC  540
LRSMDDNNCG LENTSLMEDT ICGGSMQFNS HAAKAFLSER WKEAIAAEHV KLVLTLECES  600
SGFQEVQSDC QVAVFQPSDF HKKNFCSNGE SRSVNIDSST MGAGKAPKFR LKPEKVKNYN  660
PTKQEKHYNT KMSGGVGATC NEVSLQREEE VTYKQQDDSS SFKKANKTAT RAPRKAAAFL  720
SLRQLNALAV ITVFAASGMV SAGDFVFVIF SVIYMYFLWK VSFPSLHSKE PYVFDPKNKI  780
LRLYVMVGAI IGLLLPIGYI LEGIVDGDRG AVKSAAPHVF LLASQVFMEG VAFSDGFSTP  840
IRVFVPVFYN ARRIFTLLDW LMSEFSKEES EYGISARRLY LGRALAVANT AFWCFNLFGF  900
LLPFYLPKAF KRYYSATGNK VK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	248	ERKRQKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035417.1	0.0	uncharacterized protein LOC18032948 isoform X1
Refseq	XP_024035421.1	0.0	uncharacterized protein LOC18032948 isoform X1
Refseq	XP_024958299.1	0.0	uncharacterized protein LOC102619453 isoform X2
Refseq	XP_024958300.1	0.0	uncharacterized protein LOC102619453 isoform X2
TrEMBL	A0A498KLN6	0.0	A0A498KLN6_MALDO; Uncharacterized protein
STRING	XP_006490422.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-124	C2H2-like zinc finger protein