PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_1195_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 22842.9 Da PI: 8.1201 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.8e-38 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++rrkC+k+C la+yfpa+qpk+f+n+h+lFG+s + k+l++++++++++am+s+++e+++ra+ Pv+G++g+i++l++ql+ + el + Neem_1195_f_2 12 ACAVCKYQRRKCQKNCRLARYFPADQPKTFQNAHRLFGVSGIAKILNNVDDDKKDRAMASIIFESNIRAKYPVNGCLGLIFSLEKQLQAAVDELRH 107 7********************************************************************************************999 PP DUF260 97 lkee 100 ++++ Neem_1195_f_2 108 VNTQ 111 9877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.641 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-35 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MTIKGEGGTK QACAVCKYQR RKCQKNCRLA RYFPADQPKT FQNAHRLFGV SGIAKILNNV 60 DDDKKDRAMA SIIFESNIRA KYPVNGCLGL IFSLEKQLQA AVDELRHVNT QLAICREQTQ 120 YQTPTSSSNP SEIRIDVNNL IEQSGNLDDH EFYVDINEDV KPFVRNIDEQ NYGFIHRIYD 180 INQKNIKAEL HMDWLQKF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 8 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 8 | 112 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482664.2 | 4e-66 | LOB domain-containing protein 3-like | ||||
Swissprot | Q9STS6 | 1e-37 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | V4SU83 | 8e-65 | V4SU83_9ROSI; Uncharacterized protein | ||||
STRING | XP_006482664.1 | 5e-66 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-40 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|