PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11510_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | YABBY | ||||||||
Protein Properties | Length: 169aa MW: 18937.9 Da PI: 9.2225 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 43.1 | 1.6e-13 | 34 | 73 | 22 | 61 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 + vsvP +s+f++vtvrCGhC++llsv++ + q++++++ Neem_11510_f_1 34 VYVSVPCSSMFNIVTVRCGHCANLLSVSMGSSLQTIPVQD 73 359*****************************99999987 PP | |||||||
2 | YABBY | 122.6 | 5.9e-38 | 94 | 148 | 116 | 170 |
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Neem_11510_f_1 94 NAAPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 148 668**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.3E-14 | 34 | 73 | IPR006780 | YABBY protein |
Pfam | PF04690 | 2.8E-36 | 92 | 148 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.97E-8 | 95 | 141 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-5 | 96 | 142 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKPDLGTKVV GFVDGVYCYK FKCTTIWVET YVSVYVSVPC SSMFNIVTVR CGHCANLLSV 60 SMGSSLQTIP VQDPQLCLLP LKLTYLGFST VINNAAPEKR QRVPSAYNRF IKEEIQRIKA 120 SNPDISHREA FSTAAKNWAH FPHIHFGLKV DGNKQAKLDQ TFAEGTQKY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279063.1 | 2e-68 | putative axial regulator YABBY 2 | ||||
Swissprot | Q8GW46 | 2e-50 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A061GUT1 | 6e-67 | A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | EOY33226 | 9e-68 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 7e-48 | YABBY family protein |
Publications ? help Back to Top | |||
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