PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10990_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 180aa MW: 20507.8 Da PI: 10.4255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10990_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.3e-12	11	60	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ n++E++RR+++++ +++L +++ ++ +K+s iL +A YI +Lq Neem_10990_f_1 11 RVERNMIEKNRRKHMKDLIAKLASIISPQ----TPKMSMPKILDQARSYIMQLQ 60 7889********************997....69****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-12	6	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.017	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-11	11	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	11	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-6	14	61	No hit	No description
SMART	SM00353	3.7E-7	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVRRSSSSTS RVERNMIEKN RRKHMKDLIA KLASIISPQT PKMSMPKILD QARSYIMQLQ 60 KNHEESLKRR KALLEGGDDQ KRNNSTTPER SSSSPRMLPI MNIKSSDSAL EVNLICGLTN 120 RNFKLYEIIS VLEEEGAEVI DAAQINTGDR VIYIIKCQAI ISRIGIEVSR VQQRLEQLVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046481.1	2e-57	transcription factor bHLH167
TrEMBL	A0A2H5PEV7	5e-56	A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PEV9	2e-55	A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PEY1	3e-55	A0A2H5PEY1_CITUN; Uncharacterized protein
TrEMBL	V4UBF6	5e-56	V4UBF6_9ROSI; Uncharacterized protein
STRING	XP_006446341.1	8e-57	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-33	bHLH family protein