PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.K01344.1.p | ||||||||
Common Name | LOC105960862, MIMGU_mgv1a011193mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LBD | ||||||||
Protein Properties | Length: 290aa MW: 32332.9 Da PI: 5.5394 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.4e-38 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCaaCk++rrkC+++C+lapyfpa+qpk+f++vh+lFG+snv+k+l++l+++ r+dam+s+++e+++r r Pv+G+++vi++l+ q + + + Migut.K01344.1.p 8 ACAACKYQRRKCSPKCPLAPYFPANQPKTFQCVHRLFGVSNVTKILQSLKTDIeRDDAMKSIIFESKMRERFPVEGCTRVIQDLHLQHHYALQ 100 7************************************************66544*************************************** PP DUF260 93 elallkeel 101 el++++++l Migut.K01344.1.p 101 ELNRVHAQL 109 ****99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.641 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-35 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MTGGTTPACA ACKYQRRKCS PKCPLAPYFP ANQPKTFQCV HRLFGVSNVT KILQSLKTDI 60 ERDDAMKSII FESKMRERFP VEGCTRVIQD LHLQHHYALQ ELNRVHAQLA ACRNHRHPFM 120 NNMPPPAAAD PSSTWVPAGG PPTNFELGWV DPRVSDSHPS WLPGSTRFDP GASSSNAPPP 180 QPTTTTMPAN YNNDYLMNEN SGGFYSDSDL SAIQAIQGQM GSFGIQQFPR QDQDYHESVM 240 RSMEEKLSQI DHGRTNGASF GIQQFPRQDQ DFDKISDEDD EISDEVDEP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 2 | 109 | 5 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 2 | 109 | 5 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.K01344.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840526.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A022R739 | 0.0 | A0A022R739_ERYGU; Uncharacterized protein | ||||
STRING | Migut.K01344.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-37 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Migut.K01344.1.p |
Entrez Gene | 105960862 |