PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F01877.1.p
Common NameLOC105955602, MIMGU_mgv1a0076882mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 399aa    MW: 43796.4 Da    PI: 8.6824
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F01877.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-112044327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C+++ rtG C++G++C+F+H+p
  Migut.F01877.1.p 20 EPDCSYYIRTGLCRFGATCRFNHPP 44
                      799********************97 PP
2zf-CCCH39.21.1e-126589327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      +++C+++++tGtCk+G++CkF H++
  Migut.F01877.1.p 65 QSECQYYLKTGTCKFGATCKFDHPR 89
                      689********************96 PP
3zf-CCCH331e-10113135527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C +++r+G+Ck+G++CkF+H++
  Migut.F01877.1.p 113 ECAYYMRNGQCKFGSTCKFHHPQ 135
                       5********************97 PP
4zf-CCCH37.15.3e-12259285127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+f+++tG Ck+G  CkF+H++
  Migut.F01877.1.p 259 PGQPECQFYMKTGDCKFGTVCKFHHPR 285
                       5789*********************96 PP
5zf-CCCH37.34.6e-12306331227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++lC f++r+G+Ck+G++CkF H++
  Migut.F01877.1.p 306 GEPLCVFYSRYGICKFGPSCKFDHPM 331
                       689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2671745IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-41744IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-52145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-42343IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-46289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9156290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-66391IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-106589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-56890IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436108136IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6109136IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8113135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4114134IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5258285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305258286IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8260285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6262288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5264287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7304331IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9306331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5307331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4309329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNMKSSEPMD SGLYPVREDE PDCSYYIRTG LCRFGATCRF NHPPNRKLAI ATAKMKGEYP  60
ERMGQSECQY YLKTGTCKFG ATCKFDHPRE KAGIAGRVAL NVLGYPIRAN EMECAYYMRN  120
GQCKFGSTCK FHHPQPSNMM VSLRGSAVYP PIQSPTTSQL SYPLSRASFI ASPRWQSPSS  180
YTQLVMPQGV VSVPGWNAYS GHMGSVLSSE SQQPTTGNGQ SDGASQQGGS RNTGSQFHSG  240
SVPMGYYAFQ RDNVFPERPG QPECQFYMKT GDCKFGTVCK FHHPRERLMP VPDCVLSPIG  300
LPLRTGEPLC VFYSRYGICK FGPSCKFDHP MRVFAYNAAA SPSTDSPAIR HFLASSQGTV  360
ALSYSTDGLV EAGSTNNRRL SLSEARQKSS GDNNIESE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F01877.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825711e-176AC182571.2 Erythranthe guttata clone MGBa-65G3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834812.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A022RI830.0A0A022RI83_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-174zinc finger protein 1