PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.F00690.1.p
Common NameMIMGU_mgv1a002934mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family C3H
Protein Properties Length: 625aa    MW: 67808.1 Da    PI: 6.5073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.F00690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07260280526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f + G C  Gd+C +aHg
  Migut.F00690.1.p 260 PCPDFKK-GACIKGDSCEYAHG 280
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.31E-1325149IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.9E-1330173IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-769141IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1574104IPR002110Ankyrin repeat
PROSITE profilePS5029714.45174149IPR020683Ankyrin repeat-containing domain
CDDcd002044.88E-1176149No hitNo description
SMARTSM002480.0076109141IPR002110Ankyrin repeat
PROSITE profilePS5008810.953109144IPR002110Ankyrin repeat
SMARTSM003563.2E-5255281IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915260282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4260281IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.634290314IPR000571Zinc finger, CCCH-type
SMARTSM0035637290313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MCSGSKSKLC PFDLEMETGF QDDKNGILNT NLLDLAATDD LAGFIHGVEE KGCDLNKASF  60
WYGKSFGSKK MAMEERTPIM IASLYGSTNV LNYIISTGLV DPNRACGSDG ATALHCAAAG  120
GSPSSADAVK ILIDASGDIH ALDSNGKKPS DVIAPCVKPS FNSKRRSLEM LLNGINGIDS  180
DFPEVEEEEG RVEKKEYPVD VSMPDINEGV YGSAEFRMYS FKVKPCSRAY SHDWTECPFV  240
HPGENARRRD PKKYHYSCVP CPDFKKGACI KGDSCEYAHG VFESWLHPAQ YRTRLCKDET  300
GCSRKVCFFA HKHEELRPLY ASTGSAMPSP KPVPVELSPS PPMSPSVVNC SSPMWMQNKM  360
ASLSTPPPSL QLPGSRLKSA LSARDVEFNM ELLGLERIRT QQQQRQLVEE MAGLSSSPYR  420
DFIKPTNLED VFGSLDPSLL FSPKINNNNT SNTSSPTGFQ IRQNANQLRA SYPSNGASYG  480
GFDSSAAVAA AVMNSRSTAF SKRSQSFVDR SGGGYNNRVG FAGSPKSPGP LMNSNSLSDW  540
SSPDGRLDWG FSGDDANKLR KSASFGLRSG APVATGMGRP ELDGSDGSWV QSMVRDGSGR  600
GGPGHDMMPH WVDQMYMEQE QMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.F00690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858120.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9LUZ41e-178C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A022Q0H00.0A0A022Q0H0_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-149C3H family protein