PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01938.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | MYB_related | ||||||||
Protein Properties | Length: 637aa MW: 72486.2 Da PI: 9.8043 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.3e-07 | 430 | 471 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE + ++ +++G++ Wk a ++g + + ++k+ w+ + Migut.D01938.1.p 430 KWTQEELDMVIKHQAEHGNK-WKPLADELG--KHRAHLKDTWRRL 471 8*******************.********9..6778999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.039 | 354 | 425 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.13 | 427 | 474 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.0E-7 | 428 | 489 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00925 | 430 | 472 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 430 | 482 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.69 | 430 | 472 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 2.6E-9 | 431 | 489 | No hit | No description |
PROSITE profile | PS50090 | 6.679 | 473 | 541 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.15 | 477 | 543 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 483 | 543 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.783 | 543 | 596 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MGKEGASENA TPKIEKRIKT KSKKVKKNEE TTTEMQDAQS IDTEKAVKHV RISEKEDIAE 60 TEVERVHKRD KNKKKNKESK DIEADINKDA GEGKSTVAYD EGGSGDAVEN AVSKRKKREK 120 NKNKNDGLEM ENGSEAKGNE GKKRESTSGT NSTKEASKER KKQKGKRKLE EVDFEKEGEK 180 DVKEAGRDKQ NKEKKRKKDK QKSKDGDLSS LQKENAPDNV DGDIQPISDA ENVTKEVKRK 240 DKKENKKKEN SKDDSSAASQ QNSVDKDGTK KDKSKDGKKR KKKGTKSVEN VSDGAQDNGV 300 DASKGKKNKR KKSAECGSDN PTPNKSNKKV RFSEKNEVFT LPSVPDTGEG DLVRGKRFTL 360 EEDEMVKQSV YNYIEYNDLG DEGLDMVLNC SKHPKLKGCW KEIASAIPYR PTEAIYFRAH 420 ILFRRSDNRK WTQEELDMVI KHQAEHGNKW KPLADELGKH RAHLKDTWRR LKLQNQNKGH 480 WSQKEHQKLF DLVNLDLQLK VNEEKKSKHG MLRDNICWTA VSDNLATRQS AVCCLKWYSQ 540 LTSPMVAQGI WSDTDDYRMV DALYGLDATC KEDVDWDSLV EGRSGDLCLK RWNQMTLHIG 600 GYARKSFAEQ VEVLAKRYCP HLIEVREAWD NKPRVP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 119 | RKKREK |
2 | 270 | 281 | KDKSKDGKKRKK |
3 | 277 | 281 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01938.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182577 | 0.0 | AC182577.2 Erythranthe guttata clone MGBa-93F4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829315.1 | 0.0 | PREDICTED: cylicin-1-like | ||||
TrEMBL | A0A022PS77 | 0.0 | A0A022PS77_ERYGU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-125 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01938.1.p |