PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109800.1
Common NameMTR_7g109800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 296aa    MW: 33354.1 Da    PI: 7.1123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.6e-34145202259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+
  Medtr7g109800.1 145 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPTIVVTTYEGKHTHP 202
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.5E-1191295IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.805.1E-35129204IPR003657WRKY domain
SuperFamilySSF1182903.01E-29136204IPR003657WRKY domain
PROSITE profilePS5081132.512139204IPR003657WRKY domain
SMARTSM007745.7E-40144203IPR003657WRKY domain
PfamPF031063.1E-26145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMEKKGLNME DYANIGSFPS YSFPSVFDLS EERSFMELLG VQQNMNNYSD SLLDLPVVVK  60
EPPLESDGNG KEYSEVLNSQ QQPATPNSSS ISSASSEAIN DEHNKTVDQT NNQLNKQLKA  120
KKTNQKKPRE ARIAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TSVSCNVKKH  180
VERSLSDPTI VVTTYEGKHT HPNPIMSRSS AVRAGSLLPP PAECTTNFAS DQNYDISQYY  240
NQQRQQVLFN TLSSLGFPSK NMNATFSQDR PLCNPRVQDN GLLQDVVPSH MFKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-281372041077Probable WRKY transcription factor 4
2lex_A2e-281372041077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.2710.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1463340.0BT146334.1 Medicago truncatula clone JCVI-FLMt-7D17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625994.20.0probable WRKY transcription factor 23
SwissprotO229001e-61WRK23_ARATH; WRKY transcription factor 23
TrEMBLG7KTN20.0G7KTN2_MEDTR; WRKY transcription factor
STRINGAES822120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-52WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]