PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr7g100590.1 | ||||||||
Common Name | MTR_7g100590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 472aa MW: 52008.3 Da PI: 5.9027 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 138 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Medtr7g100590.1 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.1 | 9.2e-13 | 230 | 280 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ +Aa+a+++a+ k +g Medtr7g100590.1 230 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELDAARAYDKAAIKCNG 280 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.17E-16 | 138 | 197 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-9 | 138 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.59E-12 | 139 | 197 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 139 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-17 | 139 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-33 | 139 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-8 | 230 | 280 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-16 | 230 | 289 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.18E-25 | 230 | 290 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 231 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-31 | 231 | 294 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.435 | 231 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 232 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 270 | 290 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MLDLNLNADS SLPLSSVVQM EDSSGSFDSS VVNAADTEDS CSYGDAYGYN FAILNNNASV 60 DNSTISGELQ HSGAGEAGVR TIQLFPANES GMISPSESSG WMNFSSDHHG GVPEQTAVVA 120 SRPQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR 180 AAIKFRGVDA DINFNVSDYD EDIKQMNNFT KEEFVHILRR QSTGFSRGSS KYRGVTLHKC 240 GRWEARMGQF LGKKYIYLGL FDSELDAARA YDKAAIKCNG REAVTNFEAS SYEGELTSQA 300 DNDDIKQNLD LNLGIAPPSN SDVQMMNMHH NGSGLQVQRN WDDMPVDKSV MFEDSGSRSL 360 NVQSSYGFPI ASEHQPPVWS GTNYFPVCKE RAIENRMESA PVPNWAWQLQ SPYNNGSTLI 420 LPNFSAAASS GFPSTTAADS QIHFPNITYL HPHFPTPVTN SSPIPSFYCR S* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr7g100590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625570.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | B8AMA9 | 1e-110 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | G7L1P7 | 0.0 | G7L1P7_MEDTR; AP2 domain transcription factor | ||||
STRING | AES81788 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-109 | related to AP2.7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr7g100590.1 |
Entrez Gene | 11425769 |
Publications ? help Back to Top | |||
---|---|---|---|
|