PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g092070.1
Common NameMTR_7g092070, MtrDRAFT_AC155885g16v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 735aa    MW: 80438.1 Da    PI: 6.4685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g092070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07309329526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Medtr7g092070.1 309 PCPDFRK-GACRRGDMCEYAHG 329
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.6E-1839188IPR020683Ankyrin repeat-containing domain
SMARTSM0024822004272IPR002110Ankyrin repeat
SuperFamilySSF484033.42E-1747178IPR020683Ankyrin repeat-containing domain
CDDcd002041.19E-1547178No hitNo description
PfamPF127961.9E-951158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02989119IPR002110Ankyrin repeat
PROSITE profilePS5029716.46789192IPR020683Ankyrin repeat-containing domain
SMARTSM002488.8E-4124156IPR002110Ankyrin repeat
PROSITE profilePS5008811.327124159IPR002110Ankyrin repeat
SMARTSM003564.0E-6304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582309331IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035617339362IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.474339363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MCCESEGLKP VPSSSPSLSP TLTHNSQLRN HTMNHLTIST EDSFASLLEL AANNDVEGFK  60
RLIEYDPMSV DEVGLWYGRR KGSKQMVNEQ RTPLMVAATY GSIDVMKLIF SLSDVDINRP  120
CGLDKSTALH CAASGGAENA VDAVKLLLAA GADPNSVDAN GDRPIDVIVY SPKLELVKNS  180
LEELLQIDGP SAGSNLRVIT NSLNSYSPPL SASPENGSPS PPPDLLLKLK SIDVPLSPAG  240
SEKKEYPVDP SLPDIKNSIY STDEFRMYSF KVRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CSRRVCFFAH  360
TPEELRPLYV STGSAVPSPR SSTSSAMDFA AAMSMLPGSP SSMSVMSPSP FTPPMSPSGN  420
GISHNSVAWP QPNIPALHLP GSNLQSSRLR SSLNARDIHM DDFELLSDYD QQQQLLNELA  480
CLSPRHINSN SLSRSGRMKP LNPSNLDDLF SAESSSPRYA DPNLTSTVFS PTHKSAVFNQ  540
FQQQQNMLSP VNTNFSSKNV DHHLLQAASY GVQPSGRMSP RNVEPISPMG SRMSMLAQRD  600
KQQQFRSLSF REHGSNSMLA TAGSVNNSWS KWESPNGKLD WAHNADEVGK LRRSSSFELG  660
NNGEEPDLSW VQSLVKESPT EIKEKLATSI SGAAPGGSSG EGMNMSTQLE SVDHAVLGTW  720
LEQMQLDHLV AQQN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784GRRKGSKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.129930.0flower| leaf| pod| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g092070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558850.0AC155885.2 Medicago truncatula chromosome 7 clone mth2-10p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625157.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA2Q3L50.0A2Q3L5_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGAES813750.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]