PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g085410.1
Common NameMTR_7g085410, MtrDRAFT_AC167711g18v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 265aa    MW: 29438.5 Da    PI: 8.4882
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g085410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.3e-17190224135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Medtr7g085410.1 190 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 224
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.227184220IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-14184238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-14187248No hitNo description
Gene3DG3DSA:3.30.50.103.6E-13188222IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.69E-11189236No hitNo description
PfamPF003207.6E-15190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDVCQNVQVS SECKQEKVLN PSCSNLSSSL DDLFSAQNME VDVGMEWLSV FVEDCFSSPQ  60
SCVLLPSSVQ NTTSTVSSKP SNTVKKPKQE QNESPFAVPG KARSKRKRLS APRRPKDPLS  120
ILSNTLNPQN ESLCSDPPLL KQAYWLADSE LMVPKGEKEV TKDCEVVEKE RFDFEGFVNN  180
GQNPIPTRRC THCLSQRTPQ WRAGPLGPKT LCNACGVRYK SGRLLPEYRP AKSPTFVSFL  240
HSNSHKKVME MRMNVVSSIN PPSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143950.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g085410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1450240.0AC145024.52 Medicago truncatula clone mth2-24p8, complete sequence.
GenBankAC1677110.0AC167711.1 Medicago truncatula chromosome 7 clone mth2-167p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624611.10.0GATA transcription factor 4
TrEMBLA2Q5Q20.0A2Q5Q2_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES808290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-40GATA transcription factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]