PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g079840.1 | ||||||||
Common Name | MTR_7g079840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 419aa MW: 46005.8 Da PI: 7.8802 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 31 | 57 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Medtr7g079840.1 31 PGEPDCSYYIRTGLCRFGATCRFNHPP 57 5789*********************97 PP | |||||||
2 | zf-CCCH | 39.8 | 7.6e-13 | 77 | 102 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++C+F+H++ Medtr7g079840.1 77 GQPECQYYLKTGTCKFGATCRFHHPK 102 5799********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.4e-12 | 124 | 148 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Medtr7g079840.1 124 ESECAYYLRTGQCKFGNTCKFHHPQ 148 679********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 280 | 305 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ Medtr7g079840.1 280 DQPECQFYMKTGDCKFGAVCRFHHPR 305 689*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.5e-12 | 325 | 351 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Medtr7g079840.1 325 PGEPLCVFYSRYGICKFGPSCKFDHPM 351 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-8 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 36 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.488 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 78 | 102 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 79 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 81 | 101 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 124 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 127 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-9 | 280 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 284 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 324 | 351 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 324 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 326 | 351 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 327 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 329 | 349 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MEYDAIPQEA MWQMSLRPSE TMESGPYPEH PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK 60 LAIATARMKG EFPERLGQPE CQYYLKTGTC KFGATCRFHH PKDKAGVAGR VALNILGYPL 120 RPNESECAYY LRTGQCKFGN TCKFHHPQPS NMVLPMRGSP VYPTVQSPTT AGQQSYAAGI 180 TNWSTSSYIP SPRWQGPSSY APLILPQGVV SVPGWSTYNG QMGSDSPQQT MRNDQTYGTS 240 HQGDPENAGL QGVYSQYRSG SVPVGFYALQ RENIFPERPD QPECQFYMKT GDCKFGAVCR 300 FHHPRERTIP APDCVLSPLG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGIFTYNVSA 360 SPLAEAAGRR LLGSSSGTAA LSLSSEGLVE SGSVKPRRLS LSETRPNPSG DDDIDDEG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10625 | 0.0 | leaf| pod| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g079840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU624138 | 0.0 | EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624157.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | G7KRG6 | 0.0 | G7KRG6_MEDTR; Zinc finger CCCH domain protein | ||||
STRING | AES80375 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-164 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g079840.1 |
Entrez Gene | 11410286 |
Publications ? help Back to Top | |||
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