PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g071120.1
Common NameMTR_7g071120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 496aa    MW: 55820.3 Da    PI: 6.7928
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g071120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32166223260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct ++C++kkkver+  d++++ei+Y+g+Hnh+k
  Medtr7g071120.1 166 EDGYNWRKYGQKQVKGSENPRSYYKCTNPNCSMKKKVERDL-DGQITEIVYKGTHNHPK 223
                      7****************************************.***************85 PP
2WRKY102.32.8e-32323381159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK+vkg++++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Medtr7g071120.1 323 LDDGFRWRKYGQKVVKGNPNARSYYKCTAPGCNVRKHVERAAHDIKAVITTYEGKHNHD 381
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28155224IPR003657WRKY domain
PROSITE profilePS5081123.537160224IPR003657WRKY domain
SuperFamilySSF1182909.81E-25161224IPR003657WRKY domain
SMARTSM007746.2E-35165223IPR003657WRKY domain
PfamPF031063.2E-25166222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-36308383IPR003657WRKY domain
SuperFamilySSF1182908.11E-28315383IPR003657WRKY domain
PROSITE profilePS5081136.609318383IPR003657WRKY domain
SMARTSM007745.5E-37323382IPR003657WRKY domain
PfamPF031063.2E-24324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTMDDHQYHN WETSELNTNN NHNHNHNNQV FASPTTEAFA NQSFNWNKNS LGEEEQQGDK  60
KDEKNLSDFS FPTQTKPESV FQSSTNMFQQ EQTKKQDIWK FNEPKKQTDF SSERTASKSE  120
FQSTQSYSSE IVPIKPEIHS NSVTGSGYYN YNNNASQFVR EQKRSEDGYN WRKYGQKQVK  180
GSENPRSYYK CTNPNCSMKK KVERDLDGQI TEIVYKGTHN HPKPQSNRRT NSQPTSSCTN  240
SGISDQSAMD HVSIQEDSSA SVGEEEFEQT SQTSYSGGND NALVPEAKRW KGDNENEGYC  300
ASASRTVKEP RVVVQTTSEI DILDDGFRWR KYGQKVVKGN PNARSYYKCT APGCNVRKHV  360
ERAAHDIKAV ITTYEGKHNH DVPAARGSAG YNLNRNSLTN SNIPAPIRPS AVNCYSNSSS  420
FTNSLYNNTG LPANGNQESF PQDILQGHGN FGYSSLGISM DSSVNHSQYS DAAYLKAKDE  480
RKDDSFLQSF LSNDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38152384478Probable WRKY transcription factor 4
2lex_A1e-38152384478Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.28780.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g071120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5260350.0EU526035.1 Medicago truncatula WRKY transcription factor WRKY108715 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625868.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 26
SwissprotQ6B6R41e-111WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLG7KV140.0G7KV14_MEDTR; WRKY transcription factor
STRINGAES796790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-110WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]