PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g029090.1
Common NameMTR_7g029090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 192aa    MW: 21338.3 Da    PI: 10.1689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g029090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000363355223
                     EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                     +C+ C+++++++ +L  H +  H
  Medtr7g029090.1 33 SCSVCSRVYPTSRLLSLHVSEaH 55
                     6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.9530IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280730IPR007087Zinc finger, C2H2
SMARTSM003555.43255IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803455IPR007087Zinc finger, C2H2
SMARTSM003550.057095IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MCREVFCPIA GCGARLASIE DFENHYNARH TASCSVCSRV YPTSRLLSLH VSEAHDSFFQ  60
AKVARGYDMY ECLVEGCGLK FKSYKSRQHH LVDKHKFPTS FEFFKKALPS KKHRIKSQRK  120
KPSQKEDTSG MMEVENAAMD DLVSAVSRLN TSDTAPSSIS FGRRNTKGMS FVPRAVQRGK  180
GSNSGSSVTK K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.74560.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g029090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447989.11e-141zinc finger protein 511
TrEMBLA0A072TXV81e-140A0A072TXV8_MEDTR; C2H2-type zinc finger protein
STRINGXP_004513314.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-88zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]