PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g017880.1

Common Name

MTR_7g017880

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 192aa MW: 22075.7 Da PI: 6.3467

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g017880.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.2e-14	87	138	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+ +NRe+ArrsR RK+++++eL v L +eN++L ++l++ + ++ Medtr7g017880.1 87 RKHRRMVSNRESARRSRMRKQKQLDELWSQVVWLRNENHQLLDKLNNFCE---TH 138 578**************************************966665544...43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-10	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	85	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-10	87	159	No hit	No description
Pfam	PF00170	1.9E-12	87	139	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.53E-12	87	136	No hit	No description
CDD	cd14702	6.67E-17	88	132	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MQTKEINTGL NYLLPYSDPS PYPPCNYNMI QNTIQTPQHP KLSNQFYGFN QNPIQILQDF 60 SPPSSCISSN STSDEADEQN LGLINERKHR RMVSNRESAR RSRMRKQKQL DELWSQVVWL 120 RNENHQLLDK LNNFCETHDK VVQENVQLKE QASELRQMVC DMQLHSSCLP LSPLEDVPSI 180 TSPNVKSDSS N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	106	RRSRMRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.14121	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g017880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013447699.1	1e-139	basic leucine zipper 43
Swissprot	Q9FMC2	2e-42	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A072TWB0	1e-138	A0A072TWB0_MEDTR; BZIP transcription factor
STRING	GLYMA18G51250.1	2e-78	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-44	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	Medtr7g017880.1
Entrez Gene	25497621

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]