PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g011130.1
Common NameMTR_7g011130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 353aa    MW: 40054.5 Da    PI: 5.7322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g011130.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.7e-54211453129
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                      +G+rF Ptdeel+++yL kkv+++++ +  +i+evd++k+ePwdLp+++k +e+ewyfF+ rdkky+tg+r+nrat++gyWkatgkdke+++ +
  Medtr7g011130.1  21 AGVRFFPTDEELINQYLVKKVDDNSFCA-IAIAEVDMNKCEPWDLPEMAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKDKEIYK-G 112
                      7************************988.78***************9889999***************************************.9 PP

              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++l+g+kktLvfykgrap+gek++Wvmheyrle
  Medtr7g011130.1 113 NSLIGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 145
                      99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5717182IPR003441NAC domain
PROSITE profilePS5100553.58919182IPR003441NAC domain
PfamPF023658.8E-2721144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSNENVSNQ KMENEKVKFD AGVRFFPTDE ELINQYLVKK VDDNSFCAIA IAEVDMNKCE  60
PWDLPEMAKM GETEWYFFCV RDKKYPTGQR TNRATNAGYW KATGKDKEIY KGNSLIGMKK  120
TLVFYKGRAP RGEKSNWVMH EYRLEGNSLS KHNIFPEHNL FPEHNLSTHG MSEWVVTRVF  180
EKRNCGKKMN GSKLGRSNSS REEPSNTNAA SLWAPFLEFS PYNSENKITI PDFSNEFNSF  240
TNPNQSEKPK TQYDNIVHNN ETSILNISSS SKQMDVYPLA GATVADPNLT SMAGNSSNFF  300
FSQEFSFGRE FDADADISSV VYGNDMFQRW SGYQDLSPAS TGLAANDSFW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-471618814171NO APICAL MERISTEM PROTEIN
1ut4_B2e-471618814171NO APICAL MERISTEM PROTEIN
1ut7_A2e-471618814171NO APICAL MERISTEM PROTEIN
1ut7_B2e-471618814171NO APICAL MERISTEM PROTEIN
3swm_A2e-471618817174NAC domain-containing protein 19
3swm_B2e-471618817174NAC domain-containing protein 19
3swm_C2e-471618817174NAC domain-containing protein 19
3swm_D2e-471618817174NAC domain-containing protein 19
3swp_A2e-471618817174NAC domain-containing protein 19
3swp_B2e-471618817174NAC domain-containing protein 19
3swp_C2e-471618817174NAC domain-containing protein 19
3swp_D2e-471618817174NAC domain-containing protein 19
4dul_A2e-471618814171NAC domain-containing protein 19
4dul_B2e-471618814171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.203092e-85glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g011130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400330.0AC140033.3 Medicago truncatula clone mth2-24f11, complete sequence.
GenBankAC1405440.0AC140544.22 Medicago truncatula clone mth2-17g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621267.10.0NAC domain-containing protein 92
TrEMBLG7L2220.0G7L222_MEDTR; ANAC079/ANAC080/ATNAC4 protein
STRINGAES774850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-84NAC domain containing protein 100
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]