PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g011120.1
Common NameMTR_7g011120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 311aa    MW: 35229.1 Da    PI: 6.066
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g011120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52101343129
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                      +G+rF Ptdeel+++yL kkv+++++ +  +i+evd++k+ePwdLp+++k +e+ewyfF+ rdkky+tg+r+nrat++gyWkatgk ke+++ +
  Medtr7g011120.1  10 AGVRFFPTDEELINQYLVKKVDDNSFCA-VAIAEVDMNKSEPWDLPEMAKMGETEWYFFCVRDKKYPTGQRTNRATNAGYWKATGKYKEIYK-G 101
                      7************************888.67***************9889999***************************************.9 PP

              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++l+g+kktLvfy grap+gek++Wvmheyrle
  Medtr7g011120.1 102 NSLIGMKKTLVFYIGRAPRGEKSNWVMHEYRLE 134
                      99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-558165IPR003441NAC domain
PROSITE profilePS5100552.4918165IPR003441NAC domain
PfamPF023652.2E-2610133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MENEKVKFDA GVRFFPTDEE LINQYLVKKV DDNSFCAVAI AEVDMNKSEP WDLPEMAKMG  60
ETEWYFFCVR DKKYPTGQRT NRATNAGYWK ATGKYKEIYK GNSLIGMKKT LVFYIGRAPR  120
GEKSNWVMHE YRLEGISLSK HNLFPEHNLS THGMSEWVVT RVFEKRNCGN KMNGSKLGRS  180
NSSREGPSNT NATLLPPYNS ENQSEKSKTQ DDNIVHNNET CILNISSSSK QMDVYNPFAE  240
GTVADSNQTS MVGNSSNFFS REFSFGREFD ADADISSVVY GNDMFQRWSG YQDLSPASTG  300
LAANDSFWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-49517114171NO APICAL MERISTEM PROTEIN
1ut4_B7e-49517114171NO APICAL MERISTEM PROTEIN
1ut7_A7e-49517114171NO APICAL MERISTEM PROTEIN
1ut7_B7e-49517114171NO APICAL MERISTEM PROTEIN
3swm_A8e-49517117174NAC domain-containing protein 19
3swm_B8e-49517117174NAC domain-containing protein 19
3swm_C8e-49517117174NAC domain-containing protein 19
3swm_D8e-49517117174NAC domain-containing protein 19
3swp_A8e-49517117174NAC domain-containing protein 19
3swp_B8e-49517117174NAC domain-containing protein 19
3swp_C8e-49517117174NAC domain-containing protein 19
3swp_D8e-49517117174NAC domain-containing protein 19
4dul_A7e-49517114171NAC domain-containing protein 19
4dul_B7e-49517114171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g011120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400330.0AC140033.3 Medicago truncatula clone mth2-24f11, complete sequence.
GenBankAC1405440.0AC140544.22 Medicago truncatula clone mth2-17g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621266.20.0NAC domain-containing protein 100
SwissprotQ9FLJ27e-82NC100_ARATH; NAC domain-containing protein 100
TrEMBLG7L2210.0G7L221_MEDTR; ANAC079/ANAC080/ATNAC4 protein
STRINGAES774840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-83NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]