PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g043480.1 | ||||||||
Common Name | MTR_6g043480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 231aa MW: 26111.3 Da PI: 7.5007 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.7e-08 | 108 | 149 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W++ E++l+v + ++G+g W Ia+ + ++t+ q+ s+ Medtr6g043480.1 108 PWSQLEHDLFVMGMIKYGKGKWIEIAKNFVCNKTPQQVESYA 149 8*****************************899*****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.084 | 104 | 157 | IPR017884 | SANT domain |
SMART | SM00717 | 9.7E-5 | 105 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 108 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-6 | 108 | 153 | No hit | No description |
Pfam | PF00249 | 2.1E-6 | 108 | 148 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.93E-9 | 108 | 155 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MPIETTDLTN FLDSPPSPHI SSSNTSTILN FDHVFTNPIL HHHVQHHRHQ TTLLVPPTTQ 60 GYTNESTRIT TDWPQPATHG RSLIARVLRP FPRSDTMPFP NGSRLMVPWS QLEHDLFVMG 120 MIKYGKGKWI EIAKNFVCNK TPQQVESYAT SFFRYLPDTY VHGLSKRKRN NMTVNNDHAK 180 ETLTLFPEVP TFYGGEASSS KNTNNYEAST SMTLHVGDGE VDVELRFGLN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g043480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC156830 | 8e-43 | AC156830.26 Medicago truncatula chromosome 8 clone mth2-151m10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027192183.1 | 3e-69 | uncharacterized protein LOC101488688 | ||||
TrEMBL | A0A072U8T9 | 1e-171 | A0A072U8T9_MEDTR; MYB-like DNA-binding domain protein | ||||
STRING | AET03563 | 3e-89 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14942 | 6 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-13 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g043480.1 |
Entrez Gene | 25496304 |
Publications ? help Back to Top | |||
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